Automation, Standardization
& Migration to Open Source

We optimize analytics data workflows, help adopt data standards, automate regulatory deliverables, and migrate you to validated open-source solutions or help you adopt a multilanguage setup while automating the most time-intensive parts of your process.

Why pharma leaders choose Open Source
Operational Acceleration
Cut the manual grind — dossiers, reports, and regulatory deliverables built faster.
Strategic Advantages
Open-source reduces costs and vendor lock-in while laying the groundwork for AI.
Talent Advantage
Modern tooling attracts top talent and keeps the team you already have.
Community & Collaboration
We build the ecosystem your teams rely on and bring you into that network.

Results that compound across your organization

From operational speed to strategic positioning, our automation
and migration work delivers impact at every level.

Operational Acceleration

We eliminate the repetitive, time-consuming manual work that keeps your teams from higher-value analysis. Submission dossier creation for ICH eCTD modules — including Clinical Summary and Clinical Study Reports built on SDTM/ADaM datasets — becomes streamlined rather than grueling.

Strategic Advantages

Open-source solutions deliver significant cost reduction while eliminating long-term dependencies on proprietary software vendors. More importantly, implementing standards now creates the foundation your organization needs to accelerate AI capabilities — the companies standardizing today will be the ones deploying AI-driven analytics tomorrow.

Talent Advantage

Organizations using modern open-source tooling build an innovative reputation that attracts the next generation of data scientists and statisticians. Your existing team stays engaged because open-source expertise is transferable, career-building, and keeps them working with tools the broader industry is adopting.

Community & Collaboration

We sit on the pharmaverse council, develop core packages, and contribute directly to the ecosystem your teams depend on. Working with Appsilon gives you access to deep connections, collaborative innovation, and efficiency gains from co-developing methods and statistical software alongside the broader community.

Full-spectrum capabilities

From R and Python ecosystem work to AI-driven TLF generation, we cover the entire analytics modernization lifecycle.

Timeline

R & Python Workflows

Package development, testing, documentation, open-releasing and validation across your analytics ecosystem.

Engineering

Productionizing & Scaling

Best engineering practices applied
to existing fragmented workflow
and analytics infrastructure.

Standards

ARD/ARS Implementation

Working with CDISC datasets, generating metadata, and implementing analysis
results standards.

AI

Automated TLF Generation

Leverage AI for automated Tables, Listings,
and Figures generation from
standardized data.

Insights

CDISC Data Repository

Generating insights from a repository
of harmonized CDISC data
from past studies.

Dashboardsds

Medical Data Review

Building interactive dashboards
for performing Medical Data Review
using the raw CRF data.

DevOps

Git Workflows

Setting up and optimizing Git workflows
for version control across your
analytics teams.

Delivery

Regulatory Submissions

End-to-end support for submission
dossier creation aligned with
ICH eCTD requirements.

Migration

Open Source Transition

Structured migration from proprietary
tools to validated open-source
R and Python solutions.

#Why Appsilon

Not just a vendor.
A force multiplier.

We bring ecosystem access, regulatory experience, and elite talent that compounds your capabilities.

Pharmaverse Council Members

We sit on the pharmaverse council, develop core packages, and contribute to the ecosystem. You gain access to our deep connections and collaborative innovation.

Proven with Regulators

Partnered with Eli Lilly and R Consortium on pilot FDA submissions. We know what regulators expect and how to deliver it with open-source tooling.

Real Pharma Experience

We've helped 8 of the top 10 pharma companies modernize their analytics workflows. We understand the regulatory constraints, organizational dynamics, and technical debt you're working with.

Core Open Source Contributors

Appsilon engineers serve as core contributors to the {teal} framework, sponsored by Roche. Our team shapes the tools your teams rely on.

How We Helped Our Partners

Unlocking $930K Annual Savings with a Future-Proof Data Analytics Platform

Read how Appsilon helped a top 50 pharmaceutical company design a custom system for analytics in R and Python, saving the client $930,000 annually.

#Valued by clients worldwide
#Configured for you. Owned by you

Evolution of Validation

Continuous Risk-Based Validation
Monolithic Validation
✅  Snapshot Agility
Teams are stuck with old versions of R and libraries, missing out on new scientific methods.
❌  System Lock-in
Teams are stuck with old versions of R and libraries, missing out on new scientific methods.
✅  Automated QA
Teams are stuck with old versions of R and libraries, missing out on new scientific methods.
❌  Validation "Theatre"
Teams are stuck with old versions of R and libraries, missing out on new scientific methods.
✅  Fully deployable - includes AWS setup, CI/CD, and SSO integration.
Teams are stuck with old versions of R and libraries, missing out on new scientific methods.
❌  Innovation Lag
Teams are stuck with old versions of R and libraries, missing out on new scientific methods.
#Contact Form

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#Our Clients About Appsilon

How It Feels to Work with Us

We rely on Appsilon's expertise to support the build and maintenance of critical clinical reporting software based in R and Shiny.

Data Engineering Lead

Top 10 Pharma Company

Appsilon team is exceptional. The engineers challenge and speak their minds, which helps do justice to the product

Associate Director

Top 50 Pharma Company

We wouldn’t be here where we are now without Appsilon. I want this partnership to keep going and growing.

Human Resources People Partner

Top 10 Pharma Company

FAQs

Find clear answers to common questions about GxP compliance, helping you navigate regulations with confidence.

Timelines vary based on the scope of your existing SAS codebase and the complexity of your regulatory workflows. A focused pilot — migrating a single study's TLF pipeline — typically takes 8–12 weeks. Full-scale enterprise migrations are phased over 6–18 months, running parallel to existing SAS workflows to ensure zero disruption to ongoing submissions.

Yes. The FDA has publicly stated that they accept submissions using R. Appsilon partnered with Eli Lilly and the R Consortium on pilot FDA submissions that demonstrated R-based workflows meet regulatory expectations. The key is proper validation — which is exactly what our frameworks like Axon.R are built to provide.

We never recommend a hard cutover. Our migrations run in parallel — your SAS environment stays fully operational while we build, validate, and QC the open-source equivalent. Teams transition gradually, often starting with new studies on the R/Python stack while existing studies complete on SAS. License costs reduce naturally as adoption shifts.

Every solution we deliver follows a validated, audit-ready process. Our Axon.R framework provides GxP-aligned R package validation with full traceability. We implement IQ/OQ/PQ protocols, maintain validation documentation, and work within your existing quality management system. Our engineers have direct experience with regulatory inspections and know what auditors look for.

Absolutely. Most of our pharma partnerships start with a scoped pilot — a single workflow automation, one study migration, or a proof-of-concept dashboard. This lets you evaluate our team, our process, and the ROI before scaling. The pilot typically delivers enough measurable value to build the internal business case for broader adoption.

We're not just consultants — we're core contributors to the tools the industry uses. Our engineers build and maintain key pharmaverse packages, contribute to the {teal} framework sponsored by Roche, and sit on the pharmaverse council. When you work with us, you're working with the people who shape the ecosystem, not just use it.

Contact Us

Drive Impact with Appsilon

From custom dashboards and applications to AI-powered solutions and compliant computing environments, our engineers and infrastructure architects accelerate clinical development within fully validated, regulatory-compliant frameworks.